Assembly
ASM5508105v1
BioProject PRJNA1348486 · BioSample SAMN52901276
GENOME-RESOLVED EVIDENCE
GCA_055081055.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3937918 bp · GC 31.500%
Completeness 98.450% · contamination 0.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWJJY_13505 | MHE2227966.1 | OG0000061 | CM143647.1:2862536–2863879 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM040] |
| ldhACWJJY_18060 | MHE2228808.1 | OG0000131 | CM143647.1:3800493–3801440 + | L-lactate dehydrogenase [Clostridium sp. CM040] |
| accBACWJJY_00205 | MHE2225430.1 | OG0000212 | CM143647.1:67713–68105 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM040] |
| accBACWJJY_13495 | MHE2227964.1 | OG0000212 | CM143647.1:2861451–2861969 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM040] |
| hbdACWJJY_11010 | MHE2227545.1 | OG0000229 | CM143647.1:2324961–2325809 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM040] |
| thlACWJJY_10500 | MHE2227444.1 | OG0000234 | CM143647.1:2214603–2215781 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM040] |
| fabZACWJJY_13500 | MHE2227965.1 | OG0000785 | CM143647.1:2862039–2862485 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM040] |
| lctPACWJJY_08715 | MHE2227091.1 | OG0001228 | CM143647.1:1840925–1842448 - | L-lactate permease [Clostridium sp. CM040] |
| rnfAACWJJY_08525 | MHE2227054.1 | OG0001328 | CM143647.1:1800885–1801466 - | electron transport complex protein RnfA [Clostridium sp. CM040] |
| crtACWJJY_11030 | MHE2227549.1 | OG0001394 | CM143647.1:2328975–2329754 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM040] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.