Assembly
ASM5508107v1
BioProject PRJNA1348486 · BioSample SAMN52901275
GENOME-RESOLVED EVIDENCE
GCA_055081075.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4064243 bp · GC 31.500%
Completeness 98.450% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWJJ2_14160 | MHE2280133.1 | OG0000061 | CM143649.1:3047893–3049236 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM039] |
| accBACWJJ2_00215 | MHE2277470.1 | OG0000212 | CM143649.1:68044–68436 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM039] |
| accBACWJJ2_14150 | MHE2280131.1 | OG0000212 | CM143649.1:3046808–3047326 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM039] |
| hbdACWJJ2_11400 | MHE2279661.1 | OG0000229 | CM143649.1:2411309–2412157 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM039] |
| thlACWJJ2_10810 | MHE2279544.1 | OG0000234 | CM143649.1:2282326–2283504 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM039] |
| fabZACWJJ2_14155 | MHE2280132.1 | OG0000785 | CM143649.1:3047396–3047842 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM039] |
| lctPACWJJ2_09065 | MHE2279198.1 | OG0001228 | CM143649.1:1914779–1916302 - | L-lactate permease [Clostridium sp. CM039] |
| rnfAACWJJ2_08875 | MHE2279161.1 | OG0001328 | CM143649.1:1874745–1875326 - | electron transport complex protein RnfA [Clostridium sp. CM039] |
| crtACWJJ2_11420 | MHE2279665.1 | OG0001394 | CM143649.1:2415323–2416102 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM039] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.