Assembly
ASM5508109v1
BioProject PRJNA1348486 · BioSample SAMN52901273
GENOME-RESOLVED EVIDENCE
GCA_055081095.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4368597 bp · GC 31.500%
Completeness 97.200% · contamination 0.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWJKP_01065 | MHE2221636.1 | OG0000061 | CM143650.1:202584–203927 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM037] |
| ldhACWJKP_05885 | MHE2222532.1 | OG0000131 | CM143650.1:1249296–1250243 + | L-lactate dehydrogenase [Clostridium sp. CM037] |
| ldhACWJKP_13875 | MHE2224085.1 | OG0000131 | CM143650.1:2859295–2860242 + | L-lactate dehydrogenase [Clostridium sp. CM037] |
| accBACWJKP_01055 | MHE2221634.1 | OG0000212 | CM143650.1:201499–202017 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM037] |
| accBACWJKP_06320 | MHE2222614.1 | OG0000212 | CM143650.1:1354721–1355113 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM037] |
| fabHACWJKP_04540 | MHE2222273.1 | OG0000222 | CM143650.1:961621–962694 + | 3-oxoacyl-ACP synthase III family protein [Clostridium sp. CM037] |
| hbdACWJKP_18810 | MHE2225029.1 | OG0000229 | CM143650.1:3913885–3914733 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM037] |
| thlACWJKP_18240 | MHE2224921.1 | OG0000234 | CM143650.1:3790762–3791940 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM037] |
| fabZACWJKP_01060 | MHE2221635.1 | OG0000785 | CM143650.1:202087–202533 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM037] |
| lctPACWJKP_16290 | MHE2224547.1 | OG0001228 | CM143650.1:3387889–3389412 - | L-lactate permease [Clostridium sp. CM037] |
| rnfAACWJKP_16085 | MHE2224507.1 | OG0001328 | CM143650.1:3344866–3345447 - | electron transport complex protein RnfA [Clostridium sp. CM037] |
| crtACWJKP_18830 | MHE2225033.1 | OG0001394 | CM143650.1:3917899–3918678 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM037] |
| crtACWJKP_04505 | MHE2222266.1 | OG0020293 | CM143650.1:956914–957690 + | enoyl-CoA hydratase-related protein [Clostridium sp. CM037] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.