Assembly
ASM5508110v1
BioProject PRJNA1348486 · BioSample SAMN52901274
GENOME-RESOLVED EVIDENCE
GCA_055081105.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4215996 bp · GC 31.500%
Completeness 98.450% · contamination 0.830%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWJKS_18230 | MHE2274384.1 | OG0000061 | CM143651.1:3941190–3942533 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM038] |
| ldhACWJKS_13600 | MHE2273528.1 | OG0000131 | CM143651.1:2961597–2962544 - | L-lactate dehydrogenase [Clostridium sp. CM038] |
| accBACWJKS_13135 | MHE2273442.1 | OG0000212 | CM143651.1:2830088–2830387 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM038] |
| accBACWJKS_18240 | MHE2274386.1 | OG0000212 | CM143651.1:3943100–3943618 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM038] |
| hbdACWJKS_01430 | MHE2271173.1 | OG0000229 | CM143651.1:321261–322109 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM038] |
| thlACWJKS_02165 | MHE2271316.1 | OG0000234 | CM143651.1:480060–481238 + | acetyl-CoA C-acetyltransferase [Clostridium sp. CM038] |
| fabZACWJKS_18235 | MHE2274385.1 | OG0000785 | CM143651.1:3942584–3943030 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM038] |
| lctPACWJKS_03965 | MHE2271670.1 | OG0001228 | CM143651.1:873129–874652 + | L-lactate permease [Clostridium sp. CM038] |
| rnfAACWJKS_04165 | MHE2271709.1 | OG0001328 | CM143651.1:915130–915711 + | electron transport complex protein RnfA [Clostridium sp. CM038] |
| crtACWJKS_01410 | MHE2271169.1 | OG0001394 | CM143651.1:317316–318095 + | short-chain-enoyl-CoA hydratase [Clostridium sp. CM038] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.