Assembly
ASM5508113v1
BioProject PRJNA1348486 · BioSample SAMN52901272
GENOME-RESOLVED EVIDENCE
GCA_055081135.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3901878 bp · GC 31.500%
Completeness 98.450% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWJKE_13385 | MHE2258981.1 | OG0000061 | CM143652.1:2848758–2850101 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM036] |
| ldhACWJKE_18035 | MHE2259838.1 | OG0000131 | CM143652.1:3800950–3801897 + | L-lactate dehydrogenase [Clostridium sp. CM036] |
| accBACWJKE_00220 | MHE2256478.1 | OG0000212 | CM143652.1:68131–68523 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM036] |
| accBACWJKE_13375 | MHE2258979.1 | OG0000212 | CM143652.1:2847673–2848191 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM036] |
| hbdACWJKE_10955 | MHE2258567.1 | OG0000229 | CM143652.1:2323263–2324111 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM036] |
| thlACWJKE_10385 | MHE2258456.1 | OG0000234 | CM143652.1:2201805–2202983 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM036] |
| fabZACWJKE_13380 | MHE2258980.1 | OG0000785 | CM143652.1:2848261–2848707 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM036] |
| lctPACWJKE_08665 | MHE2258116.1 | OG0001228 | CM143652.1:1838651–1840174 - | L-lactate permease [Clostridium sp. CM036] |
| rnfAACWJKE_08475 | MHE2258079.1 | OG0001328 | CM143652.1:1798614–1799195 - | electron transport complex protein RnfA [Clostridium sp. CM036] |
| crtACWJKE_10975 | MHE2258571.1 | OG0001394 | CM143652.1:2327277–2328056 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM036] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.