Assembly
ASM5527373v1
BioProject PRJNA391949 · BioSample SAMN07185497
GENOME-RESOLVED EVIDENCE
GCA_055273735.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3806626 bp · GC 28.000%
Completeness 99.490% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabH | 3-oxoacyl-ACP synthase III | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCF063_17485 | MHF2688563.1 | OG0000061 | CM143877.1:3759480–3760826 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium botulinum] |
| ldhCF063_07640 | MHF2686678.1 | OG0000131 | CM143877.1:1646366–1647322 - | L-lactate dehydrogenase [Clostridium botulinum] |
| accBCF063_17495 | MHF2688565.1 | OG0000212 | CM143877.1:3761312–3761788 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium botulinum] |
| fabHCF063_12105 | MHF2687553.1 | OG0000222 | CM143877.1:2624022–2625032 - | 3-oxoacyl-ACP synthase III family protein [Clostridium botulinum] |
| hbdCF063_15310 | MHF2688178.1 | OG0000229 | CM143877.1:3329351–3330181 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlCF063_15305 | MHF2688177.1 | OG0000234 | CM143877.1:3328148–3329326 - | acetyl-CoA C-acetyltransferase [Clostridium botulinum] |
| fabZCF063_17490 | MHF2688564.1 | OG0000785 | CM143877.1:3760858–3761292 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium botulinum] |
| adhECF063_01885 | MHF2685551.1 | OG0001124 | CM143877.1:399610–402198 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium botulinum] |
| lctPCF063_04920 | MHF2686141.1 | OG0001228 | CM143877.1:1063014–1064537 + | L-lactate permease [Clostridium botulinum] |
| rnfACF063_02025 | MHF2685578.1 | OG0001328 | CM143877.1:432765–433343 + | electron transport complex protein RnfA [Clostridium botulinum] |
| crtCF063_15315 | MHF2688179.1 | OG0001639 | CM143877.1:3330212–3330994 - | short-chain-enoyl-CoA hydratase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.