Assembly
ASM5533022v1
BioProject PRJNA1422947 · BioSample SAMN55325876
GENOME-RESOLVED EVIDENCE
GCA_055330225.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4155555 bp · GC 28.500%
Completeness 99.380% · contamination 2.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACZJV1_14220 | MHF3747835.1 | OG0000061 | CM143921.1:3019347–3020690 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. LS3] |
| ldhACZJV1_12830 | MHF3747562.1 | OG0000131 | CM143921.1:2725924–2726862 - | L-lactate dehydrogenase [Clostridium sp. LS3] |
| accBACZJV1_14230 | MHF3747837.1 | OG0000212 | CM143921.1:3021133–3021618 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. LS3] |
| hbdACZJV1_02300 | MHF3745485.1 | OG0000229 | CM143921.1:443301–444143 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. LS3] |
| thlACZJV1_03915 | MHF3745806.1 | OG0000234 | CM143921.1:845115–846296 + | acetyl-CoA C-acetyltransferase [Clostridium sp. LS3] |
| thlACZJV1_16820 | MHF3748342.1 | OG0000234 | CM143921.1:3555818–3556999 - | acetyl-CoA C-acetyltransferase [Clostridium sp. LS3] |
| fabZACZJV1_14225 | MHF3747836.1 | OG0000785 | CM143921.1:3020706–3021122 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. LS3] |
| adhEACZJV1_06675 | MHF3746350.1 | OG0001124 | CM143921.1:1440142–1442766 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. LS3] |
| crtACZJV1_02280 | MHF3745481.1 | OG0001394 | CM143921.1:439301–440083 + | short-chain-enoyl-CoA hydratase [Clostridium sp. LS3] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.