Assembly
ASM5538345v1
BioProject PRJDB20344 · BioSample SAMD00887349
GENOME-RESOLVED EVIDENCE
GCA_055383455.1
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3067813 bp · GC 28.500%
Completeness 98.760% · contamination 0.640%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCJCM1385_11890 | BGS43664.1 | OG0000061 | AP042432.1:1234087–1235439 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium baratii] |
| ldhJCM1385_06890 | BGS43164.1 | OG0000131 | AP042432.1:721454–722404 + | L-lactate dehydrogenase [Clostridium baratii] |
| ldhJCM1385_25260 | BGS45001.1 | OG0000131 | AP042432.1:2649635–2650585 - | L-lactate dehydrogenase [Clostridium baratii] |
| accBJCM1385_11870 | BGS43662.1 | OG0000212 | AP042432.1:1233147–1233653 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium baratii] |
| hbdJCM1385_01680 | BGS42643.1 | OG0000229 | AP042432.1:171597–172445 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium baratii] |
| thlJCM1385_02790 | BGS42754.1 | OG0000234 | AP042432.1:298147–299325 + | acetyl-CoA C-acetyltransferase [Clostridium baratii] |
| fabZJCM1385_11880 | BGS43663.1 | OG0000785 | AP042432.1:1233655–1234077 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium baratii] |
| lctPJCM1385_04250 | BGS42900.1 | OG0001228 | AP042432.1:450191–451717 + | L-lactate permease [Clostridium baratii] |
| crtJCM1385_01640 | BGS42639.1 | OG0001394 | AP042432.1:167745–168527 + | short-chain-enoyl-CoA hydratase [Clostridium baratii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.