Assembly
ASM5539034v1
BioProject PRJDB16159 · BioSample SAMD00628698
GENOME-RESOLVED EVIDENCE
GCA_055390345.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3706123 bp · GC 28.000%
Completeness 97.480% · contamination 8.690%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCP280TFG_14050 | BEP25562.1 | OG0000061 | AP028647.1:1593353–1594705 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhCP280TFG_01060 | BEP24263.1 | OG0000131 | AP028647.1:151357–152310 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBCP280TFG_14030 | BEP25560.1 | OG0000212 | AP028647.1:1592428–1592919 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdCP280TFG_27620 | BEP26919.1 | OG0000229 | AP028647.1:3042801–3043649 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlCP280TFG_25930 | BEP26750.1 | OG0000234 | AP028647.1:2869166–2870344 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZCP280TFG_14040 | BEP25561.1 | OG0000785 | AP028647.1:1592922–1593341 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhECP280TFG_29940 | BEP27151.1 | OG0001124 | AP028647.1:3300083–3302680 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPCP280TFG_03130 | BEP24470.1 | OG0001228 | AP028647.1:398333–399856 + | L-lactate permease [Clostridium perfringens] |
| rnfACP280TFG_13950 | BEP25552.1 | OG0001328 | AP028647.1:1585787–1586362 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtCP280TFG_27660 | BEP26923.1 | OG0001394 | AP028647.1:3046776–3047558 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtCP280TFG_00980 | BEP24255.1 | OG0001639 | AP028647.1:140699–141475 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.