Assembly
ASM5539660v1
BioProject PRJDB20344 · BioSample SAMD00887379
GENOME-RESOLVED EVIDENCE
GCA_055396605.1
Clostridium budayi · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3022431 bp · GC 28.000%
Completeness 98.760% · contamination 1.260%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCJCM9989_16010 | BGT09658.1 | OG0000061 | AP042456.1:1725623–1726975 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium budayi] |
| ldhJCM9989_20940 | BGT10151.1 | OG0000131 | AP042456.1:2226131–2227081 - | L-lactate dehydrogenase [Clostridium budayi] |
| accBJCM9989_16030 | BGT09660.1 | OG0000212 | AP042456.1:1727409–1727915 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium budayi] |
| hbdJCM9989_26170 | BGT10674.1 | OG0000229 | AP042456.1:2777107–2777955 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium budayi] |
| thlJCM9989_25080 | BGT10565.1 | OG0000234 | AP042456.1:2650905–2652083 - | acetyl-CoA C-acetyltransferase [Clostridium budayi] |
| fabZJCM9989_16020 | BGT09659.1 | OG0000785 | AP042456.1:1726985–1727407 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium budayi] |
| lctPJCM9989_23540 | BGT10411.1 | OG0001228 | AP042456.1:2487463–2488989 - | L-lactate permease [Clostridium budayi] |
| crtJCM9989_26210 | BGT10678.1 | OG0001394 | AP042456.1:2781010–2781792 - | short-chain-enoyl-CoA hydratase [Clostridium budayi] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.