Assembly
ASM5539752v1
BioProject PRJDB37411 · BioSample SAMD01620628
GENOME-RESOLVED EVIDENCE
GCA_055397525.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3023263 bp · GC 28.500%
Completeness 73.180% · contamination 0.890%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCUA12024_14010 | BHE41492.1 | OG0000061 | AP044032.1:1276295–1277647 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| accBUA12024_13990 | BHE41490.1 | OG0000212 | AP044032.1:1275370–1275861 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdUA12024_29370 | BHE43028.1 | OG0000229 | AP044032.1:2634259–2635107 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlUA12024_28140 | BHE42905.1 | OG0000234 | AP044032.1:2507806–2508984 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZUA12024_14000 | BHE41491.1 | OG0000785 | AP044032.1:1275864–1276283 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| lctPUA12024_04150 | BHE40506.1 | OG0001228 | AP044032.1:393355–394878 + | L-lactate permease [Clostridium perfringens] |
| rnfAUA12024_13910 | BHE41482.1 | OG0001328 | AP044032.1:1268762–1269307 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtUA12024_29410 | BHE43032.1 | OG0001394 | AP044032.1:2638233–2639015 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtUA12024_01270 | BHE40218.1 | OG0001639 | AP044032.1:131006–131782 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.