Assembly
ASM5569400v1
BioProject PRJNA1371646 · BioSample SAMN53506274
GENOME-RESOLVED EVIDENCE
GCA_055694005.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4444008 bp · GC 29.000%
Completeness 86.700% · contamination 3.370%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACWV2B_05370 | MHI4341055.1 | OG0000061 | CM146347.1:1194445–1195797 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCACWV2B_12575 | MHI4342466.1 | OG0000061 | CM146347.1:2751519–2752886 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhACWV2B_03530 | MHI4340697.1 | OG0000131 | CM146347.1:768747–769685 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACWV2B_05020 | MHI4340985.1 | OG0000131 | CM146347.1:1116938–1117891 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACWV2B_07725 | MHI4341521.1 | OG0000131 | CM146347.1:1716126–1717079 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhACWV2B_17655 | MHI4343386.1 | OG0000131 | JBSPDU010000002.1:44678–45622 + | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBACWV2B_05360 | MHI4341053.1 | OG0000212 | CM146347.1:1193498–1194004 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| accBACWV2B_12580 | MHI4342467.1 | OG0000212 | CM146347.1:2752929–2753387 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdACWV2B_15490 | MHI4342998.1 | OG0000229 | CM146347.1:3355935–3356783 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlACWV2B_14955 | MHI4342922.1 | OG0000234 | CM146347.1:3257868–3259049 - | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZACWV2B_05365 | MHI4341054.1 | OG0000785 | CM146347.1:1194008–1194436 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEACWV2B_00670 | MHI4340161.1 | OG0001124 | CM146347.1:131198–133828 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPACWV2B_07225 | MHI4341421.1 | OG0001228 | CM146347.1:1596449–1597990 + | L-lactate permease [Clostridium butyricum] |
| crtACWV2B_15510 | MHI4343002.1 | OG0001394 | CM146347.1:3359999–3360784 - | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.