Assembly
ASM5575536v1
BioProject PRJNA1397519 · BioSample SAMN54434466
GENOME-RESOLVED EVIDENCE
GCA_055755365.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3200646 bp · GC 31.000%
Completeness 99.070% · contamination 1.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 2 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACX0KU_04830 | MHI9275893.1 | OG0000061 | CM146912.1:947863–949206 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. X] |
| ldhACX0KU_15630 | MHI9277956.1 | OG0000131 | CM146912.1:3102129–3103076 - | L-lactate dehydrogenase [Clostridium sp. X] |
| accBACX0KU_04840 | MHI9275895.1 | OG0000212 | CM146912.1:949663–950157 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. X] |
| fabGACX0KU_07130 | MHI9276306.1 | OG0000449 | CM146912.1:1383770–1384537 + | 3-oxoacyl-ACP reductase [Clostridium sp. X] |
| fabZACX0KU_04835 | MHI9275894.1 | OG0000785 | CM146912.1:949215–949640 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. X] |
| lctPACX0KU_10020 | MHI9276865.1 | OG0001228 | CM146912.1:1985224–1986879 + | L-lactate permease [Clostridium sp. X] |
| lctPACX0KU_10715 | MHI9277002.1 | OG0001228 | CM146912.1:2133561–2135216 + | L-lactate permease [Clostridium sp. X] |
| rnfAACX0KU_00310 | MHI9275058.1 | OG0001328 | CM146912.1:56194–56769 - | electron transport complex protein RnfA [Clostridium sp. X] |
| crtACX0KU_01440 | MHI9275281.1 | OG0001394 | CM146912.1:303435–304220 - | short-chain-enoyl-CoA hydratase [Clostridium sp. X] |
| crtACX0KU_08265 | MHI9276528.1 | OG0001639 | CM146912.1:1623669–1624445 + | short-chain-enoyl-CoA hydratase [Clostridium sp. X] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.