Assembly
ASM5581445v1
BioProject PRJNA1088978 · BioSample SAMN40517309
GENOME-RESOLVED EVIDENCE
GCA_055814455.1
[Clostridium] innocuum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4121800 bp · GC 44.000%
Completeness 87.920% · contamination 2.800%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCWHA61_06640 | YDL24435.1 | OG0000061 | CP150439.1:1387211–1388578 + | acetyl-CoA carboxylase biotin carboxylase subunit [[Clostridium] innocuum] |
| ldhWHA61_06250 | YDL24357.1 | OG0000131 | CP150439.1:1299984–1300934 + | L-lactate dehydrogenase [[Clostridium] innocuum] |
| ldhWHA61_06255 | YDL24358.1 | OG0000131 | CP150439.1:1301039–1301989 + | L-lactate dehydrogenase [[Clostridium] innocuum] |
| accBWHA61_06635 | YDL24434.1 | OG0000212 | CP150439.1:1386750–1387214 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [[Clostridium] innocuum] |
| thlWHA61_08910 | YDL24866.1 | OG0000234 | CP150439.1:1856065–1857270 - | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| thlWHA61_08915 | YDL24867.1 | OG0000234 | CP150439.1:1857467–1858675 - | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| fabZWHA61_06685 | YDL24444.1 | OG0000785 | CP150439.1:1396334–1396768 + | 3-hydroxyacyl-ACP dehydratase FabZ [[Clostridium] innocuum] |
| crtWHA61_08940 | YDL24872.1 | OG0011992 | CP150439.1:1863032–1863811 + | short-chain-enoyl-CoA hydratase [[Clostridium] innocuum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.