Assembly
ASM5603398v1
BioProject PRJNA1309251 · BioSample SAMN50739616
GENOME-RESOLVED EVIDENCE
GCA_056033985.1
Clostridium aciditolerans · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5407549 bp · GC 31.500%
Completeness 95.650% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 2 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACZIYC_25295 | MHL7861777.1 | OG0000061 | CM148504.1:5358321–5359667 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium aciditolerans] |
| ldhACZIYC_11105 | MHL7859087.1 | OG0000131 | CM148504.1:2368713–2369660 - | L-lactate dehydrogenase [Clostridium aciditolerans] |
| accBACZIYC_25305 | MHL7861779.1 | OG0000212 | CM148504.1:5360385–5360906 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium aciditolerans] |
| hbdACZIYC_03950 | MHL7857691.1 | OG0000229 | CM148504.1:856971–857816 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium aciditolerans] |
| hbdACZIYC_15450 | MHL7859935.1 | OG0000229 | CM148504.1:3274351–3275199 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium aciditolerans] |
| thlACZIYC_03955 | MHL7857692.1 | OG0000234 | CM148504.1:857986–859164 + | acetyl-CoA C-acetyltransferase [Clostridium aciditolerans] |
| thlACZIYC_15475 | MHL7859940.1 | OG0000234 | CM148504.1:3279726–3280901 - | acetyl-CoA C-acetyltransferase [Clostridium aciditolerans] |
| fabZACZIYC_25300 | MHL7861778.1 | OG0000785 | CM148504.1:5359756–5360202 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium aciditolerans] |
| adhEACZIYC_02350 | MHL7857394.1 | OG0001124 | CM148504.1:492378–495008 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium aciditolerans] |
| adhEACZIYC_04820 | MHL7857859.1 | OG0001124 | CM148504.1:1043179–1045782 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium aciditolerans] |
| lctPACZIYC_12710 | MHL7859400.1 | OG0001228 | CM148504.1:2704017–2705525 - | L-lactate permease [Clostridium aciditolerans] |
| rnfAACZIYC_19890 | MHL7860781.1 | OG0001328 | CM148504.1:4248616–4249197 - | electron transport complex protein RnfA [Clostridium aciditolerans] |
| crtACZIYC_15470 | MHL7859939.1 | OG0001394 | CM148504.1:3278915–3279697 - | short-chain-enoyl-CoA hydratase [Clostridium aciditolerans] |
| crtACZIYC_03945 | MHL7857690.1 | OG0001639 | CM148504.1:855991–856809 + | short-chain-enoyl-CoA hydratase [Clostridium aciditolerans] |
| fabZACZIYC_13260 | MHL7859508.1 | OG0018560 | CM148504.1:2824088–2824501 - | 3-hydroxyacyl-ACP dehydratase FabZ family protein [Clostridium aciditolerans] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.