Assembly
ASM5613552v1
BioProject PRJNA1434639 · BioSample SAMN56416354
GENOME-RESOLVED EVIDENCE
GCA_056135525.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5052164 bp · GC 32.000%
Completeness 99.380% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 2 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAC0N0V_23435 | MHM5050327.1 | OG0000061 | CM148680.1:4945105–4946451 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CS1-1] |
| ldhAC0N0V_02690 | MHM5046398.1 | OG0000131 | CM148680.1:609875–610840 + | L-lactate dehydrogenase [Clostridium sp. CS1-1] |
| accBAC0N0V_23445 | MHM5050329.1 | OG0000212 | CM148680.1:4946967–4947500 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CS1-1] |
| hbdAC0N0V_05945 | MHM5046985.1 | OG0000229 | CM148680.1:1315069–1315914 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CS1-1] |
| thlAC0N0V_05950 | MHM5046986.1 | OG0000234 | CM148680.1:1316026–1317204 + | acetyl-CoA C-acetyltransferase [Clostridium sp. CS1-1] |
| fabZAC0N0V_23440 | MHM5050328.1 | OG0000785 | CM148680.1:4946476–4946931 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CS1-1] |
| adhEAC0N0V_23365 | MHM5050313.1 | OG0001124 | CM148680.1:4930094–4932718 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. CS1-1] |
| lctPAC0N0V_16155 | MHM5048942.1 | OG0001228 | CM148680.1:3425360–3426868 - | L-lactate permease [Clostridium sp. CS1-1] |
| lctPAC0N0V_21635 | MHM5049987.1 | OG0001228 | CM148680.1:4557695–4559290 - | L-lactate permease [Clostridium sp. CS1-1] |
| rnfAAC0N0V_17815 | MHM5049265.1 | OG0001328 | CM148680.1:3790210–3790791 - | electron transport complex protein RnfA [Clostridium sp. CS1-1] |
| crtAC0N0V_05940 | MHM5046984.1 | OG0001639 | CM148680.1:1314150–1314929 + | short-chain-enoyl-CoA hydratase [Clostridium sp. CS1-1] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.