Assembly
ASM5662919v1
BioProject PRJNA1446273 · BioSample SAMN56817208
GENOME-RESOLVED EVIDENCE
GCA_056629195.1
Proteiniphilum sp. LBM24028 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3871389 bp · GC 44.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_480368505.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 75.400 / 0.87000 | Bridge orthogroup OG0000034 |
| accCWP_480369761.1 · acetyl-CoA carboxylase biotin carboxylase subunit | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 633.800 / 0.99300 | Bridge orthogroup OG0010352 |
| fabFWP_480366418.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 552.500 / 0.99800 | Annotation: gene_symbol |
| fabGWP_480369987.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 236.800 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_480370994.1 · bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase | High | Approved candidatestrong profile and bridge orthogroup support | 104.900 / 0.74900 | Bridge orthogroup OG0000074 |
| rnfAWP_480368208.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 263.600 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfAWP_480364986.1 · NADH:ubiquinone reductase (Na(+)-transporting) subunit E | High | Approved candidatestrong profile and bridge orthogroup support | 177.600 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_480368220.1 · Fe-S cluster domain-containing protein | High | Approved candidatestrong profile and bridge orthogroup support | 258.900 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_480370997.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 369.600 / 0.74400 | Bridge orthogroup OG0001114 |
| rnfDWP_480368217.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 346.200 / 0.94100 | Bridge orthogroup OG0001182 |
| rnfEWP_480368211.1 · RnfABCDGE type electron transport complex subunit E | High | Approved candidatestrong profile and bridge orthogroup support | 272.700 / 0.93300 | Bridge orthogroup OG0001153 |
| rnfEWP_480364989.1 · NADH:ubiquinone reductase (Na(+)-transporting) subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 174.000 / 0.89400 | Bridge orthogroup OG0001153 |
| crtWP_480367875.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.100 / 0.99200 | Profile only |
| etfAWP_480369162.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 360.800 / 0.96700 | Profile only |
| etfBWP_480369159.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 241.400 / 0.99600 | Profile only |
| fabGWP_480366830.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 212.800 / 0.98400 | Profile only |
| fabGWP_480365931.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.100 / 0.98800 | Profile only |
| fabGWP_480366891.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 164.800 / 0.97200 | Profile only |
| fabGWP_480368305.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 161.000 / 0.97200 | Profile only |
| fabGWP_286860945.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.200 / 0.93500 | Profile only |
| fabGWP_480365530.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.500 / 0.98800 | Profile only |
| fabGWP_480365675.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 121.700 / 0.78600 | Profile only |
| fabGWP_480368383.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 114.400 / 0.98000 | Profile only |
| fabGWP_480369371.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 105.700 / 0.78200 | Profile only |
| fabHWP_286860928.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 256.100 / 0.99400 | Profile only |
| fabKWP_480366436.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 379.700 / 0.97500 | Profile only |
| fabLWP_480369987.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.100 / 0.98400 | Profile only |
| fabLWP_480365931.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.000 / 0.97200 | Profile only |
| fabLWP_480365530.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.000 / 0.98400 | Profile only |
| fabLWP_480366830.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 170.300 / 0.97600 | Profile only |
| fabLWP_286860945.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 151.200 / 0.90100 | Profile only |
| fabLWP_480366891.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 145.600 / 0.96800 | Profile only |
| fabLWP_480368305.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 135.500 / 0.98800 | Profile only |
| fabLWP_480369371.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 121.300 / 0.93300 | Profile only |
| hbdWP_480365988.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 197.900 / 0.98600 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.