Assembly
ASM5663179v1
BioProject PRJNA1446301 · BioSample SAMN56817917
GENOME-RESOLVED EVIDENCE
GCA_056631795.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3599469 bp · GC 28.000%
Completeness 99.200% · contamination 7.300%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAC1HM4_06850 | MHP8618930.1 | OG0000061 | CM152821.1:1550857–1552209 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhAC1HM4_00670 | MHP8617728.1 | OG0000131 | CM152821.1:151361–152314 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBAC1HM4_06840 | MHP8618928.1 | OG0000212 | CM152821.1:1549932–1550423 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdAC1HM4_13560 | MHP8620220.1 | OG0000229 | CM152821.1:2970540–2971388 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlAC1HM4_12725 | MHP8620079.1 | OG0000234 | CM152821.1:2814313–2815491 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZAC1HM4_06845 | MHP8618929.1 | OG0000785 | CM152821.1:1550426–1550845 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEAC1HM4_14950 | MHP8620469.1 | OG0001124 | CM152821.1:3247308–3249905 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPAC1HM4_01860 | MHP8617953.1 | OG0001228 | CM152821.1:419965–421488 + | L-lactate permease [Clostridium perfringens] |
| crtAC1HM4_13580 | MHP8620224.1 | OG0001394 | CM152821.1:2974515–2975297 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtAC1HM4_00630 | MHP8617720.1 | OG0001639 | CM152821.1:140703–141479 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.