Assembly
ASM5685671v1
BioProject PRJNA1452281 · BioSample SAMN57228732
GENOME-RESOLVED EVIDENCE
GCA_056856715.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3468644 bp · GC 28.500%
Completeness 96.940% · contamination 5.020%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAC1VYH_06760 | MHR2975911.1 | OG0000061 | CM166462.1:1527847–1529199 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhAC1VYH_00680 | MHR2974722.1 | OG0000131 | CM166462.1:152907–153860 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBAC1VYH_06750 | MHR2975909.1 | OG0000212 | CM166462.1:1526922–1527413 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdAC1VYH_12980 | MHR2977103.1 | OG0000229 | CM166462.1:2874133–2874981 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlAC1VYH_12255 | MHR2976985.1 | OG0000234 | CM166462.1:2737276–2738454 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZAC1VYH_06755 | MHR2975910.1 | OG0000785 | CM166462.1:1527416–1527835 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEAC1VYH_14280 | MHR2977336.1 | OG0001124 | CM166462.1:3131366–3133963 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPAC1VYH_01690 | MHR2974914.1 | OG0001228 | CM166462.1:385629–387152 + | L-lactate permease [Clostridium perfringens] |
| crtAC1VYH_13000 | MHR2977107.1 | OG0001394 | CM166462.1:2878108–2878890 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtAC1VYH_00640 | MHR2974714.1 | OG0001639 | CM166462.1:142251–143027 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.