Assembly
ASM5732130v1
BioProject PRJNA1114922 · BioSample SAMN41576637
GENOME-RESOLVED EVIDENCE
GCA_057321305.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4665638 bp · GC 29.000%
Completeness 83.940% · contamination 4.660%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAC2FRP_04750 | MHT4848955.1 | OG0000061 | CM170498.1:1005558–1006904 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCAC2FRP_06275 | MHT4849249.1 | OG0000061 | CM170498.1:1341719–1343071 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhAC2FRP_05890 | MHT4849173.1 | OG0000131 | CM170498.1:1258162–1259115 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhAC2FRP_09200 | MHT4849821.1 | OG0000131 | CM170498.1:1957279–1958232 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhAC2FRP_14940 | MHT4850921.1 | OG0000131 | CM170498.1:3163363–3164301 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhAC2FRP_20820 | MHT4852015.1 | OG0000131 | JBXXIA010000002.1:518396–519340 - | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBAC2FRP_04745 | MHT4848954.1 | OG0000212 | CM170498.1:1005053–1005514 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| accBAC2FRP_06265 | MHT4849247.1 | OG0000212 | CM170498.1:1340772–1341278 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdAC2FRP_01900 | MHT4848432.1 | OG0000229 | CM170498.1:405357–406205 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlAC2FRP_02475 | MHT4848516.1 | OG0000234 | CM170498.1:511830–513011 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZAC2FRP_06270 | MHT4849248.1 | OG0000785 | CM170498.1:1341282–1341710 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEAC2FRP_17710 | MHT4851440.1 | OG0001124 | CM170498.1:3802803–3805433 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPAC2FRP_08735 | MHT4849731.1 | OG0001228 | CM170498.1:1837581–1839122 + | L-lactate permease [Clostridium butyricum] |
| crtAC2FRP_01880 | MHT4848428.1 | OG0001394 | CM170498.1:401356–402141 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.