Assembly
ASM5778247v1
BioProject PRJNA1458630 · BioSample SAMN57513453
GENOME-RESOLVED EVIDENCE
GCA_057782475.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3852029 bp · GC 28.500%
Completeness 100.000% · contamination 1.450%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCAC2A4K_08495 | MHV4053616.1 | OG0000061 | CM173488.1:1933258–1934610 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. LIBA-8841] |
| ldhAC2A4K_00735 | MHV4052089.1 | OG0000131 | CM173488.1:168112–169065 - | L-lactate dehydrogenase [Clostridium sp. LIBA-8841] |
| accBAC2A4K_08485 | MHV4053614.1 | OG0000212 | CM173488.1:1932333–1932824 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. LIBA-8841] |
| hbdAC2A4K_15160 | MHV4054894.1 | OG0000229 | CM173488.1:3420198–3421046 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. LIBA-8841] |
| thlAC2A4K_14550 | MHV4054798.1 | OG0000234 | CM173488.1:3306046–3307224 - | acetyl-CoA C-acetyltransferase [Clostridium sp. LIBA-8841] |
| fabZAC2A4K_08490 | MHV4053615.1 | OG0000785 | CM173488.1:1932827–1933246 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. LIBA-8841] |
| adhEAC2A4K_16465 | MHV4055130.1 | OG0001124 | CM173488.1:3683092–3685689 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. LIBA-8841] |
| lctPAC2A4K_01940 | MHV4052320.1 | OG0001228 | CM173488.1:449120–450643 + | L-lactate permease [Clostridium sp. LIBA-8841] |
| crtAC2A4K_15180 | MHV4054898.1 | OG0001394 | CM173488.1:3424171–3424953 - | short-chain-enoyl-CoA hydratase [Clostridium sp. LIBA-8841] |
| crtAC2A4K_00670 | MHV4052076.1 | OG0001639 | CM173488.1:151367–152143 + | enoyl-CoA hydratase-related protein [Clostridium sp. LIBA-8841] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.