Assembly
C. beijerinckii DSM 6423
BioProject PRJEB11626 · BioSample SAMEA3649235
GENOME-RESOLVED EVIDENCE
GCA_900010805.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6410404 bp · GC 30.000%
Completeness 92.330% · contamination 7.980%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCIBE_1209 | CUU46279.1 | OG0000131 | LN908213.1:1267163–1268113 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhCIBE_3301 | CUU48402.1 | OG0000131 | LN908213.1:3359841–3360794 - | L-lactate dehydrogenase 3 [Clostridium beijerinckii] |
| ldhCIBE_4912 | CUU50002.1 | OG0000131 | LN908213.1:4999542–5000492 - | L-lactate dehydrogenase 2 [Clostridium beijerinckii] |
| ldhCIBE_5915 | CUU51000.1 | OG0000131 | LN908213.1:6158179–6159126 - | L-lactate dehydrogenase 3 [Clostridium beijerinckii] |
| mmgBCIBE_0343 | CUU45428.1 | OG0000229 | LN908213.1:366447–367295 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| atoBCIBE_4329 | CUU49425.1 | OG0000234 | LN908213.1:4428745–4429923 - | acetyl-CoA acetyltransferase [Clostridium beijerinckii] |
| accDCIBE_1275 | CUU46345.1 | OG0000403 | LN908213.1:1342322–1343185 + | acetyl-CoA carboxylase (carboxyltransferase beta subunit) [Clostridium beijerinckii] |
| accACIBE_1276 | CUU46346.1 | OG0000885 | LN908213.1:1343188–1344006 + | acetyl-CoA carboxylase (carboxyltransferase alpha subunit) [Clostridium beijerinckii] |
| lctPCIBE_3434 | CUU48535.1 | OG0001228 | LN908213.1:3521757–3523292 - | L-lactate permease [Clostridium beijerinckii] |
| phaJCIBE_4057 | CUU49153.1 | OG0003747 | LN908213.1:4178106–4178522 - | (R)-specific enoyl-CoA hydratase [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.