Assembly
JF4335
BioProject PRJEB3959 · BioSample SAMEA102059668
GENOME-RESOLVED EVIDENCE
GCA_900168365.1
Clostridium chauvoei · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2887451 bp · GC 28.500%
Completeness 97.520% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCCH01_15420 | SLK18746.1 | OG0000034 | LT799839.1:1608102–1609241 - | Putative (3-hydroxy)butyryl-coA dehydrogenase [Clostridium chauvoei JF4335] |
| ldhCCH01_14340 | SLK18324.1 | OG0000131 | LT799839.1:1508800–1509750 + | Putative L-lactate dehydrogenase [Clostridium chauvoei JF4335] |
| ldhCCH01_26050 | SLK22911.1 | OG0000131 | LT799839.1:2758383–2759333 - | Putative L-lactate dehydrogenase [Clostridium chauvoei JF4335] |
| thlCCH01_23130 | SLK22239.1 | OG0000234 | LT799839.1:2444262–2445443 - | Putative Acetyl-CoA acetyltransferase [Clostridium chauvoei JF4335] |
| accACCH01_11340 | SLK16895.1 | OG0000885 | LT799839.1:1191034–1191849 + | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium chauvoei JF4335] |
| lctPCCH01_03560 | SLK12601.1 | OG0001228 | LT799839.1:361292–362812 + | putative lactate permease [Clostridium chauvoei JF4335] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.