Assembly
44310_G02
BioProject PRJEB6403 · BioSample SAMEA3867463
GENOME-RESOLVED EVIDENCE
GCA_900475545.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3291135 bp · GC 28.500%
Completeness 97.300% · contamination 4.220%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| fabD | malonyl-CoA--ACP transacylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| fixBNCTC13170_02655 | SQG41111.1 | OG0000082 | LS483393.1:2899594–2900601 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| ldhNCTC13170_00137 | SQG37397.1 | OG0000131 | LS483393.1:151379–152332 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBNCTC13170_01379 | SQG38801.1 | OG0000212 | LS483393.1:1535954–1536445 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| fadB2NCTC13170_02654 | SQG41110.1 | OG0000229 | LS483393.1:2898632–2899480 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| atoBNCTC13170_02511 | SQG40948.1 | OG0000234 | LS483393.1:2767324–2768502 - | acetyl-CoA acetyltransferase [Clostridium perfringens] |
| fabDNCTC13170_01376 | SQG38797.1 | OG0000333 | LS483393.1:1532998–1533942 + | malonyl CoA-ACP transacylase [Clostridium perfringens] |
| adhE_3NCTC13170_02923 | SQG41576.1 | OG0001124 | LS483393.1:3156236–3158833 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPNCTC13170_00344 | SQG37591.1 | OG0001228 | LS483393.1:391292–392815 + | L-lactate permease [Clostridium perfringens] |
| bcdNCTC13170_02657 | SQG41114.1 | OG0001311 | LS483393.1:2901421–2902560 - | butyryl-CoA dehydrogenase [Clostridium perfringens] |
| echA8NCTC13170_00129 | SQG37389.1 | OG0001639 | LS483393.1:140721–141497 + | crotonase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.