Assembly
48269_B01
BioProject PRJEB6403 · BioSample SAMEA4040483
GENOME-RESOLVED EVIDENCE
GCA_900478015.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3273517 bp · GC 28.500%
Completeness 98.060% · contamination 2.600%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| fabD | malonyl-CoA--ACP transacylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| fixBNCTC2837_02638 | SQI05612.1 | OG0000082 | LS483461.1:2878441–2879448 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| ldhNCTC2837_00141 | SQI02136.1 | OG0000131 | LS483461.1:155808–156761 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBNCTC2837_01384 | SQI04425.1 | OG0000212 | LS483461.1:1533529–1534020 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| fadB2NCTC2837_02637 | SQI05611.1 | OG0000229 | LS483461.1:2877479–2878327 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| atoBNCTC2837_02514 | SQI05515.1 | OG0000234 | LS483461.1:2760120–2761298 - | acetyl-CoA acetyltransferase [Clostridium perfringens] |
| fabDNCTC2837_01381 | SQI04422.1 | OG0000333 | LS483461.1:1530573–1531517 + | malonyl CoA-ACP transacylase [Clostridium perfringens] |
| adhE_3NCTC2837_02906 | SQI05843.1 | OG0001124 | LS483461.1:3134617–3137214 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPNCTC2837_00358 | SQI02721.1 | OG0001228 | LS483461.1:397509–399032 + | L-lactate permease [Clostridium perfringens] |
| bcdNCTC2837_02640 | SQI05614.1 | OG0001311 | LS483461.1:2880268–2881407 - | butyryl-CoA dehydrogenase [Clostridium perfringens] |
| echA8NCTC2837_00133 | SQI02117.1 | OG0001639 | LS483461.1:145154–145930 + | crotonase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.