Assembly
ASM91916255v1
BioProject PRJEB44145 · BioSample SAMEA9534266
GENOME-RESOLVED EVIDENCE
GCA_919162555.1
Clostridium neonatale · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4753394 bp · GC 28.500%
Completeness 86.430% · contamination 0.750%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfA | electron transfer flavoprotein alpha subunit | 1 |
| etfB | electron transfer flavoprotein beta subunit | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| etfACNEO_0437 | CAH0435173.1 | OG0000082 | OU997945.1:424869–425876 + | Electron transfer flavoprotein alpha subunit [Clostridium neonatale] |
| etfBCNEO_0436 | CAH0435172.1 | OG0000098 | OU997945.1:424067–424846 + | Electron transfer flavoprotein beta subunit [Clostridium neonatale] |
| ldhCNEO_2377 | CAH0437001.1 | OG0000131 | OU997945.1:2308778–2309734 + | L-lactate dehydrogenase (L-LDH) [Clostridium neonatale] |
| ldhCNEO_2502 | CAH0437123.1 | OG0000131 | OU997945.1:2452769–2453713 - | L-lactate dehydrogenase (L-LDH) [Clostridium neonatale] |
| ldhCNEO_3523 | CAH0438084.1 | OG0000131 | OU997945.1:3482940–3483896 - | L-lactate dehydrogenase (L-LDH) [Clostridium neonatale] |
| ldhCNEO_3977 | CAH0438519.1 | OG0000131 | OU997945.1:3922854–3923792 + | L-lactate dehydrogenase (L-LDH) [Clostridium neonatale] |
| hbdCNEO_0438 | CAH0435174.1 | OG0000229 | OU997945.1:426099–426947 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium neonatale] |
| thlCNEO_0568 | CAH0435295.1 | OG0000234 | OU997945.1:566596–567774 + | Acetyl-CoA acetyltransferase [Clostridium neonatale] |
| thlCNEO_2779 | CAH0437382.1 | OG0000234 | OU997945.1:2755198–2756376 - | Acetyl-CoA acetyltransferase [Clostridium neonatale] |
| lctPCNEO_2614 | CAH0437229.1 | OG0001228 | OU997945.1:2577760–2579280 - | Putative L-lactate permease LutP [Clostridium neonatale] |
| bcdCNEO_0435 | CAH0435171.1 | OG0001311 | OU997945.1:422914–424053 + | Butyryl-CoA dehydrogenase [Clostridium neonatale] |
| crtCNEO_0434 | CAH0435170.1 | OG0001394 | OU997945.1:422048–422833 + | Short-chain-enoyl-CoA hydratase (crotonase) [Clostridium neonatale] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.