Assembly
ASM5731977v1
BioProject PRJNA1445481 · BioSample SAMN56790501
GENOME-RESOLVED EVIDENCE
GCF_057319775.1
Sporomusa sp. 246TCP1 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6018072 bp · GC 43.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_485665347.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 139.000 / 0.97500 | Annotation: gene_symbol |
| accCWP_485665346.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 685.100 / 0.99100 | Annotation: gene_symbol |
| fabGWP_485665787.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 253.700 / 0.99600 | Bridge orthogroup OG0000008 |
| fabZWP_485664951.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 160.900 / 0.76500 | Bridge orthogroup OG0000074 |
| lctPWP_485665087.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 440.300 / 0.98400 | Bridge orthogroup OG0000731 |
| fabZWP_485665036.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 75.000 / 0.93400 | Profile only |
| fabFWP_485664649.1 · beta-ketoacyl-[acyl-carrier-protein] synthase family protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 410.300 / 0.98600 | Profile only |
| fabGWP_021170310.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 224.000 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_485664645.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 216.500 / 0.96800 | Profile only |
| fabGWP_485665726.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 212.500 / 0.98400 | Profile only |
| fabGWP_485665379.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.400 / 0.98800 | Profile only |
| fabLWP_485665726.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 219.600 / 0.96800 | Profile only |
| fabLWP_021170310.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.400 / 0.96000 | Profile only |
| fabLWP_485665787.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.900 / 0.97200 | Profile only |
| fabLWP_485665379.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.500 / 0.97200 | Profile only |
| fabLWP_485664645.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 158.700 / 0.96400 | Profile only |
| rnfCWP_485665201.1 · SLBB domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 500.500 / 0.99100 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.