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Marker_Predictions
8737 matching records · showing up to 50 per page
| Assembly Accession | Assembly Organism Scientific Name | Marker Code | Protein Accession | Orthogroup Accession | Method | Confidence | Curation Status | Domain Score | Score Cutoff | Domain I Evalue | Hmm Coverage | Sequence Coverage | Orthogroup Supported | Annotation Support | Product | Seqid | Start | End | Strand | Curation Reason | Evidence Title |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodeaccC | Protein AccessionWP_012391659.1 | Orthogroup AccessionOG0003273 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score540.200 | Score Cutoff373.900 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000054 | Hmm Coverage0.99100 | Sequence Coverage0.93900 | Orthogroup Supported— | Annotation Support— | Productacetyl-CoA carboxylase biotin carboxylase subunit | SeqidNC_010610.1 | Start1822113 | End1823501 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodeaccD | Protein AccessionWP_004563305.1 | Orthogroup AccessionOG0000844 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score349.200 | Score Cutoff253.500 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 | Hmm Coverage0.93500 | Sequence Coverage0.95400 | Orthogroup SupportedTrue | Annotation Support— | Productacetyl-CoA carboxylase carboxyltransferase subunit beta | SeqidNC_010610.1 | Start386242 | End387090 | Strand+ | Curation Reasonstrong profile and bridge orthogroup support | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodeadhE | Protein AccessionWP_004562754.1 | Orthogroup AccessionOG0002334 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score1089.700 | Score Cutoff801.100 | Domain I Evalue— | Hmm Coverage0.99500 | Sequence Coverage0.98300 | Orthogroup SupportedTrue | Annotation Supportgene_symbol | Productbifunctional acetaldehyde-CoA/alcohol dehydrogenase | SeqidNC_010610.1 | Start344360 | End346963 | Strand+ | Curation Reasonstrong profile and bridge orthogroup support; annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker Codecrt | Protein AccessionWP_003683002.1 | Orthogroup AccessionOG0000004 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score151.800 | Score Cutoff118.200 | Domain I Evalue0.000000000000000000000000000000000000000000000032 | Hmm Coverage0.98800 | Sequence Coverage0.94100 | Orthogroup Supported— | Annotation Support— | Product1,4-dihydroxy-2-naphthoyl-CoA synthase | SeqidNC_010610.1 | Start1121217 | End1122038 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabF | Protein AccessionWP_003682547.1 | Orthogroup AccessionOG0000297 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusapproved_candidate | Domain Score516.300 | Score Cutoff358.250 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000076 | Hmm Coverage0.99000 | Sequence Coverage0.99300 | Orthogroup Supported— | Annotation Supportgene_symbol | Productbeta-ketoacyl-ACP synthase II | SeqidNC_010610.1 | Start382731 | End383969 | Strand+ | Curation Reasonstrong profile plus independent annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabG | Protein AccessionWP_003681624.1 | Orthogroup AccessionOG0000008 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusneeds_review | Domain Score189.200 | Score Cutoff70.850 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000012 | Hmm Coverage0.97200 | Sequence Coverage0.98400 | Orthogroup SupportedTrue | Annotation Support— | Product(S)-acetoin forming diacetyl reductase | SeqidNC_010610.1 | Start1687101 | End1687874 | Strand- | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabG | Protein AccessionWP_003682544.1 | Orthogroup AccessionOG0000008 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score221.100 | Score Cutoff70.850 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000021 | Hmm Coverage0.99200 | Sequence Coverage0.99600 | Orthogroup SupportedTrue | Annotation Supportspecific_product_name | Product3-oxoacyl-ACP reductase family protein | SeqidNC_010610.1 | Start381987 | End382718 | Strand+ | Curation Reasonstrong profile and bridge orthogroup support; annotation support: specific_product_name | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabG | Protein AccessionWP_004563304.1 | Orthogroup AccessionOG0001129 | Methodcalibrated_profile_hmm | Confidencelow | Curation Statusexcluded_low_confidence | Domain Score79.400 | Score Cutoff70.850 | Domain I Evalue0.0000000000000000000000004 | Hmm Coverage0.97600 | Sequence Coverage0.97200 | Orthogroup Supported— | Annotation Support— | Productenoyl-ACP reductase FabI | SeqidNC_010610.1 | Start387874 | End388638 | Strand+ | Curation Reasonprofile hit lacks strong score and bridge orthogroup support | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabG | Protein AccessionWP_012391165.1 | Orthogroup AccessionOG0002106 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score196.900 | Score Cutoff70.850 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000054 | Hmm Coverage0.99200 | Sequence Coverage0.99200 | Orthogroup Supported— | Annotation Support— | Productglucose 1-dehydrogenase | SeqidNC_010610.1 | Start969647 | End970390 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabG | Protein AccessionWP_012391688.1 | Orthogroup AccessionOG0005890 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score184.900 | Score Cutoff70.850 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000025 | Hmm Coverage0.96000 | Sequence Coverage0.95200 | Orthogroup Supported— | Annotation Support— | ProductSDR family NAD(P)-dependent oxidoreductase | SeqidNC_010610.1 | Start1870330 | End1871079 | Strand- | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabG | Protein AccessionWP_012391768.1 | Orthogroup AccessionOG0002628 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score202.300 | Score Cutoff70.850 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000012 | Hmm Coverage0.98800 | Sequence Coverage0.96900 | Orthogroup Supported— | Annotation Support— | Productglucose 1-dehydrogenase | SeqidNC_010610.1 | Start2005925 | End2006692 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabG | Protein AccessionWP_171029993.1 | Orthogroup AccessionOG0000242 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusneeds_review | Domain Score171.400 | Score Cutoff70.850 | Domain I Evalue0.000000000000000000000000000000000000000000000000000033 | Hmm Coverage0.88700 | Sequence Coverage0.79100 | Orthogroup SupportedTrue | Annotation Support— | ProductSDR family NAD(P)-dependent oxidoreductase | SeqidNC_010610.1 | Start731279 | End732112 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabH | Protein AccessionWP_004563309.1 | Orthogroup AccessionOG0005504 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score248.400 | Score Cutoff185.750 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000015 | Hmm Coverage0.97600 | Sequence Coverage0.98700 | Orthogroup Supported— | Annotation Support— | Productbeta-ketoacyl-ACP synthase III | SeqidNC_010610.1 | Start379820 | End380779 | Strand+ | Curation Reasonno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabI | Protein AccessionWP_004563304.1 | Orthogroup AccessionOG0001129 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusapproved_candidate | Domain Score348.200 | Score Cutoff193.450 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 | Hmm Coverage0.96900 | Sequence Coverage0.98800 | Orthogroup Supported— | Annotation Supportgene_symbol | Productenoyl-ACP reductase FabI | SeqidNC_010610.1 | Start387874 | End388638 | Strand+ | Curation Reasonstrong profile plus independent annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabK | Protein AccessionWP_012391681.1 | Orthogroup AccessionOG0004246 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score203.500 | Score Cutoff166.150 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000073 | Hmm Coverage0.95200 | Sequence Coverage0.99400 | Orthogroup Supported— | Annotation Support— | ProductNAD(P)H-dependent flavin oxidoreductase | SeqidNC_010610.1 | Start1853036 | End1853986 | Strand- | Curation Reasonno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabL | Protein AccessionWP_003681624.1 | Orthogroup AccessionOG0000008 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score193.100 | Score Cutoff107.850 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000009 | Hmm Coverage0.99200 | Sequence Coverage0.99600 | Orthogroup Supported— | Annotation Support— | Product(S)-acetoin forming diacetyl reductase | SeqidNC_010610.1 | Start1687101 | End1687874 | Strand- | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabL | Protein AccessionWP_003682544.1 | Orthogroup AccessionOG0000008 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score167.200 | Score Cutoff107.850 | Domain I Evalue0.00000000000000000000000000000000000000000000000000073 | Hmm Coverage0.97600 | Sequence Coverage0.98800 | Orthogroup Supported— | Annotation Support— | Product3-oxoacyl-ACP reductase family protein | SeqidNC_010610.1 | Start381987 | End382718 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabL | Protein AccessionWP_012391165.1 | Orthogroup AccessionOG0002106 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score165.400 | Score Cutoff107.850 | Domain I Evalue0.0000000000000000000000000000000000000000000000000025 | Hmm Coverage0.99200 | Sequence Coverage0.99600 | Orthogroup Supported— | Annotation Support— | Productglucose 1-dehydrogenase | SeqidNC_010610.1 | Start969647 | End970390 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabL | Protein AccessionWP_012391688.1 | Orthogroup AccessionOG0005890 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score178.300 | Score Cutoff107.850 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000003 | Hmm Coverage0.96800 | Sequence Coverage0.96400 | Orthogroup Supported— | Annotation Support— | ProductSDR family NAD(P)-dependent oxidoreductase | SeqidNC_010610.1 | Start1870330 | End1871079 | Strand- | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabL | Protein AccessionWP_012391768.1 | Orthogroup AccessionOG0002628 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score183.300 | Score Cutoff107.850 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000088 | Hmm Coverage0.98000 | Sequence Coverage0.96500 | Orthogroup Supported— | Annotation Support— | Productglucose 1-dehydrogenase | SeqidNC_010610.1 | Start2005925 | End2006692 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabL | Protein AccessionWP_171029993.1 | Orthogroup AccessionOG0000242 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score152.900 | Score Cutoff107.850 | Domain I Evalue0.000000000000000000000000000000000000000000000017 | Hmm Coverage0.77000 | Sequence Coverage0.70000 | Orthogroup Supported— | Annotation Support— | ProductSDR family NAD(P)-dependent oxidoreductase | SeqidNC_010610.1 | Start731279 | End732112 | Strand+ | Curation Reasonextreme per-proteome copy number; profile alone is not function-specific | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabZ | Protein AccessionWP_003682551.1 | Orthogroup AccessionOG0000074 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score165.600 | Score Cutoff42.550 | Domain I Evalue0.0000000000000000000000000000000000000000000000000014 | Hmm Coverage0.74300 | Sequence Coverage0.93100 | Orthogroup SupportedTrue | Annotation Supportgene_symbol | Product3-hydroxyacyl-ACP dehydratase FabZ | SeqidNC_010610.1 | Start384421 | End384855 | Strand+ | Curation Reasonstrong profile and bridge orthogroup support; annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker CodefabZ | Protein AccessionWP_004563311.1 | Orthogroup AccessionOG0000074 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score122.500 | Score Cutoff42.550 | Domain I Evalue0.000000000000000000000000000000000000025 | Hmm Coverage0.75400 | Sequence Coverage0.91900 | Orthogroup SupportedTrue | Annotation Supportgene_symbol | Product3-hydroxyacyl-ACP dehydratase FabZ | SeqidNC_010610.1 | Start378834 | End379280 | Strand+ | Curation Reasonstrong profile and bridge orthogroup support; annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker Codeldh | Protein AccessionWP_004563357.1 | Orthogroup AccessionOG0000777 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score222.800 | Score Cutoff183.450 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000096 | Hmm Coverage0.96800 | Sequence Coverage0.95900 | Orthogroup Supported— | Annotation Support— | ProductL-lactate dehydrogenase | SeqidNC_010610.1 | Start295677 | End296621 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker Codeldh | Protein AccessionWP_012390864.1 | Orthogroup AccessionOG0000777 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score230.900 | Score Cutoff183.450 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000033 | Hmm Coverage0.96800 | Sequence Coverage0.96200 | Orthogroup Supported— | Annotation Support— | ProductL-lactate dehydrogenase | SeqidNC_010610.1 | Start417799 | End418740 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker Codeldh | Protein AccessionWP_012391006.1 | Orthogroup AccessionOG0000777 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score233.200 | Score Cutoff183.450 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000066 | Hmm Coverage0.95900 | Sequence Coverage0.95800 | Orthogroup Supported— | Annotation Support— | ProductL-lactate dehydrogenase | SeqidNC_010610.1 | Start692851 | End693783 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker Codeldh | Protein AccessionWP_012391154.1 | Orthogroup AccessionOG0001545 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score367.800 | Score Cutoff183.450 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007 | Hmm Coverage0.98700 | Sequence Coverage0.97800 | Orthogroup Supported— | Annotation Support— | ProductL-lactate dehydrogenase | SeqidNC_010610.1 | Start951470 | End952423 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000010145.1 | Assembly Organism Scientific NameLimosilactobacillus fermentum IFO 3956 | Marker Codethl | Protein AccessionWP_003682977.1 | Orthogroup AccessionOG0000010 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score513.200 | Score Cutoff281.200 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000064 | Hmm Coverage0.99700 | Sequence Coverage1.00000 | Orthogroup SupportedTrue | Annotation Support— | Productacetyl-CoA C-acetyltransferase | SeqidNC_010610.1 | Start1142171 | End1143343 | Strand+ | Curation Reasonstrong profile and bridge orthogroup support | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker CodeaccA | Protein AccessionWP_012250348.1 | Orthogroup AccessionOG0001120 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score351.400 | Score Cutoff242.650 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048 | Hmm Coverage0.98900 | Sequence Coverage0.85100 | Orthogroup SupportedTrue | Annotation Support— | Productacetyl-CoA carboxylase carboxyltransferase subunit alpha | SeqidNC_010170.1 | Start3642325 | End3643275 | Strand- | Curation Reasonstrong profile and bridge orthogroup support | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker CodeaccB | Protein AccessionWP_012247596.1 | Orthogroup AccessionOG0002893 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusapproved_candidate | Domain Score135.400 | Score Cutoff67.350 | Domain I Evalue0.0000000000000000000000000000000000000000026 | Hmm Coverage0.98100 | Sequence Coverage0.99300 | Orthogroup Supported— | Annotation Supportgene_symbol | Productacetyl-CoA carboxylase biotin carboxyl carrier protein | SeqidNC_010170.1 | Start632099 | End632548 | Strand+ | Curation Reasonstrong profile plus independent annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker CodeaccC | Protein AccessionWP_012247318.1 | Orthogroup AccessionOG0000786 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score436.600 | Score Cutoff373.900 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 | Hmm Coverage0.98700 | Sequence Coverage0.36400 | Orthogroup Supported— | Annotation Support— | Producturea carboxylase | SeqidNC_010170.1 | Start325501 | End329130 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker CodeaccC | Protein AccessionWP_012247597.1 | Orthogroup AccessionOG0001358 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusapproved_candidate | Domain Score584.100 | Score Cutoff373.900 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 | Hmm Coverage0.99600 | Sequence Coverage0.99300 | Orthogroup Supported— | Annotation Supportgene_symbol | Productacetyl-CoA carboxylase biotin carboxylase subunit | SeqidNC_010170.1 | Start632557 | End633903 | Strand+ | Curation Reasonstrong profile plus independent annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker CodeaccC | Protein AccessionWP_012248148.1 | Orthogroup AccessionOG0001358 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score479.900 | Score Cutoff373.900 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 | Hmm Coverage0.99300 | Sequence Coverage0.66000 | Orthogroup Supported— | Annotation Support— | Productacetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha | SeqidNC_010170.1 | Start1213169 | End1215184 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker CodeaccC | Protein AccessionWP_041862584.1 | Orthogroup AccessionOG0001358 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score521.100 | Score Cutoff373.900 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 | Hmm Coverage0.99100 | Sequence Coverage0.66600 | Orthogroup Supported— | Annotation Support— | Productacetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha | SeqidNC_010170.1 | Start64163 | End66187 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker CodeaccD | Protein AccessionWP_012248662.1 | Orthogroup AccessionOG0000844 | Methodcalibrated_profile_hmm | Confidencehigh | Curation Statusapproved_candidate | Domain Score321.100 | Score Cutoff253.500 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000092 | Hmm Coverage0.89400 | Sequence Coverage0.91100 | Orthogroup SupportedTrue | Annotation Supportgene_symbol | Productacetyl-CoA carboxylase, carboxyltransferase subunit beta | SeqidNC_010170.1 | Start1795020 | End1795895 | Strand+ | Curation Reasonstrong profile and bridge orthogroup support; annotation support: gene_symbol | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012247088.1 | Orthogroup AccessionOG0000258 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score366.700 | Score Cutoff254.300 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 | Hmm Coverage0.99500 | Sequence Coverage0.97400 | Orthogroup Supported— | Annotation Support— | Productisovaleryl-CoA dehydrogenase | SeqidNC_010170.1 | Start71084 | End72262 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012247290.1 | Orthogroup AccessionOG0001770 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score341.000 | Score Cutoff254.300 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 | Hmm Coverage0.96800 | Sequence Coverage0.96100 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start292800 | End293954 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012247389.1 | Orthogroup AccessionOG0001770 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score379.800 | Score Cutoff254.300 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 | Hmm Coverage0.98200 | Sequence Coverage0.97600 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start403451 | End404599 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012247575.1 | Orthogroup AccessionOG0001448 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score299.200 | Score Cutoff254.300 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 | Hmm Coverage0.83400 | Sequence Coverage0.80700 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start611121 | End612290 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012247865.1 | Orthogroup AccessionOG0002640 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score366.800 | Score Cutoff254.300 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 | Hmm Coverage0.99700 | Sequence Coverage0.98700 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start942344 | End943498 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012248231.1 | Orthogroup AccessionOG0000258 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score337.400 | Score Cutoff254.300 | Domain I Evalue0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 | Hmm Coverage0.98700 | Sequence Coverage0.95700 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start1302940 | End1304115 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012248854.1 | Orthogroup AccessionOG0001448 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score274.300 | Score Cutoff254.300 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000024 | Hmm Coverage0.92100 | Sequence Coverage0.87700 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start2007053 | End2008249 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012249181.1 | Orthogroup AccessionOG0000583 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score259.600 | Score Cutoff254.300 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000072 | Hmm Coverage0.93900 | Sequence Coverage0.93000 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start2353200 | End2354360 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012249420.1 | Orthogroup AccessionOG0003265 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score373.500 | Score Cutoff254.300 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 | Hmm Coverage0.99700 | Sequence Coverage0.98200 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start2627590 | End2628744 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012250465.1 | Orthogroup AccessionOG0000258 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score260.400 | Score Cutoff254.300 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000042 | Hmm Coverage0.98200 | Sequence Coverage0.93500 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase | SeqidNC_010170.1 | Start3774705 | End3775898 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_012250676.1 | Orthogroup AccessionOG0000258 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score321.300 | Score Cutoff254.300 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 | Hmm Coverage0.99700 | Sequence Coverage0.96900 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start3993617 | End3994783 | Strand- | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_041863569.1 | Orthogroup Accession— | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score391.100 | Score Cutoff254.300 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000076 | Hmm Coverage0.98400 | Sequence Coverage0.97600 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start1177661 | End1178806 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codebcd | Protein AccessionWP_231852659.1 | Orthogroup AccessionOG0000583 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusneeds_review | Domain Score283.700 | Score Cutoff254.300 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 | Hmm Coverage0.99500 | Sequence Coverage0.95900 | Orthogroup Supported— | Annotation Support— | Productacyl-CoA dehydrogenase family protein | SeqidNC_010170.1 | Start1270564 | End1271748 | Strand+ | Curation Reasonretain confidence tier and orthogroup-support fields during import | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codecoat | Protein AccessionWP_012247399.1 | Orthogroup AccessionOG0000367 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusapproved_candidate | Domain Score191.800 | Score Cutoff88.800 | Domain I Evalue0.000000000000000000000000000000000000000000000000000000000014 | Hmm Coverage0.95900 | Sequence Coverage0.92100 | Orthogroup Supported— | Annotation Supportspecific_product_name | Product3-oxoacid CoA-transferase subunit B | SeqidNC_010170.1 | Start414134 | End414817 | Strand+ | Curation Reasonstrong profile plus independent annotation support: specific_product_name | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
| Assembly AccessionGCA_000067205.1 | Assembly Organism Scientific NameBordetella petrii | Marker Codecoat | Protein AccessionWP_012248168.1 | Orthogroup AccessionOG0000367 | Methodcalibrated_profile_hmm | Confidencemedium | Curation Statusapproved_candidate | Domain Score213.600 | Score Cutoff88.800 | Domain I Evalue0.0000000000000000000000000000000000000000000000000000000000000000032 | Hmm Coverage0.94000 | Sequence Coverage0.96200 | Orthogroup Supported— | Annotation Supportspecific_product_name | ProductCoA transferase subunit B | SeqidNC_010170.1 | Start1231815 | End1232453 | Strand+ | Curation Reasonstrong profile plus independent annotation support: specific_product_name | Evidence TitleCross-genus MCFA calibrated HMM validation 2026-07-26 |
INTERACTIVE DATASET
The chart summarizes the most frequent values in the filtered records.