Find genomes
Search by organism or versioned assembly accession and open its evidence record.
FUNCTIONAL ORTHOLOGY EXPLORER
Explore MCFA genes and pathway modules
Interactively inspect annotation-supported markers, orthogroups, and pathway-rule coverage across curated genomes. Genomic presence is not evidence of expression or demonstrated MCFA production.
Filter markers
Focus on a named enzyme marker or MCFA pathway module.
Compare patterns
Expand the heatmap to compare marker copy-number patterns.
Trace evidence
Distinguish annotations, reviewed candidates, and pathway assessments.
50 genomes currently visible
Marker copy-number heatmap for filtered organisms
Organism names are shown first; assembly accessions remain available as secondary identifiers. The preview is limited to the first 100 matching genomes.
| Organism and assembly | Detected markers | Pathway assessments |
|---|---|---|
Clostridium scatologenesGCA_000968375.1Complete Genome | thl×3hbd×2crtetfAaccAaccD | reversebetaoxidationcore 3/4bcdetfmodule 1/3rnfcomplex 0/6lactateentrysupport 0/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 2/8 |
Clostridium septicumGCA_003606265.1Complete Genome | thlhbdcrt×2adhEldh×2lctPaccC | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 1/8 |
Clostridium septicumGCA_004101825.1Complete Genome | thlhbdcrtadhEldh×2lctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium septicumGCA_023988885.1Complete Genome | thlhbdcrtadhEldh×2lctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium septicumGCA_030664715.1Complete Genome | thlhbdcrtadhEldh×2lctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_000244875.1Complete Genome | ldh×3lctP | reversebetaoxidationcore 0/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 0/8 |
Clostridium sp.GCA_000270305.1Complete Genome | thl×4ldhlctP | reversebetaoxidationcore 1/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 0/8 |
Clostridium sp.GCA_004006395.2Complete Genome | crtadhE×2lctPrnfCaccB×2accCfabZ | reversebetaoxidationcore 1/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_004103695.1Complete Genome | thl×2hbd×2crt×2ldhlctPaccBaccCfabZ×2 | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_018223625.1Complete Genome | adhEldh×2accBaccCfabZ | reversebetaoxidationcore 0/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_019056555.1Complete Genome | thlhbd×2adhE×2lctPrnfCaccB×2accCfabGfabZ | reversebetaoxidationcore 2/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 4/8 |
Clostridium sp.GCA_023921145.1Complete Genome | hbdcrt×2adhEldhlctPaccBaccCfabZ | reversebetaoxidationcore 2/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_024730565.1Complete Genome | thlhbdcrtldhlctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_026278265.1Complete Genome | thlhbdcrtldh×4lctPaccB×2accC×2fabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_026651025.1Complete Genome | thlhbdcrtldhlctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_030585565.1Complete Genome | thlhbdcrtldhlctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_030913655.1Complete Genome | thl×2hbd×2crtadhE×2ldhlctP×3rnfAaccB×2accCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_030915445.1Complete Genome | thl×2hbd×2crt×3adhE×2ldhlctPaccBaccCfabZ×2 | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_044336395.1Complete Genome | thl×2crtldh×2rnfAaccBaccC×2fabZ | reversebetaoxidationcore 2/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 1/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_046581255.1Complete Genome | thl×2hbdcrtadhEldhaccBaccC×2fabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_047900555.1Complete Genome | thl×3hbdcrtadhEldh×2rnfAaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_052953915.1Complete Genome | thlhbdcrt×3ldhlctPrnfAaccB×2accC×2fabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_053571985.1Complete Genome | thlhbdcrtadhEldhaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_053901425.1Complete Genome | thl×2hbd×2crt×7ldh×2lctP×2rnfAaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_054889485.1Complete Genome | thlhbdcrt×2ldhlctPrnfAaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055080995.1Complete Genome | thlhbdcrtldhlctPaccB×2accCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055081035.1Complete Genome | thlhbdcrtlctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055081055.1Complete Genome | thlhbdcrtldhlctPrnfAaccB×2accCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055081075.1Complete Genome | thlhbdcrtlctPrnfAaccB×2accCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 1/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055081095.1Complete Genome | thlhbdcrt×2ldh×2lctPrnfAaccB×2accCfabHfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 4/8 |
Clostridium sp.GCA_055081105.1Complete Genome | thlhbdcrtldhlctPrnfAaccB×2accCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055081135.1Complete Genome | thlhbdcrtldhlctPrnfAaccB×2accCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055330225.1Complete Genome | thl×2hbdcrtadhEldhaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_055397745.1Complete Genome | thlhbdcrt×4adhEldhlctPaccBaccCfabHfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 4/8 |
Clostridium sp.GCA_055755365.1Complete Genome | crt×2ldhlctP×2rnfAaccBaccCfabGfabZ | reversebetaoxidationcore 1/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 4/8 |
Clostridium sp.GCA_056135525.1Complete Genome | thlhbdcrtadhEldhlctP×2rnfAaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp.GCA_057782475.1Complete Genome | thlhbdcrt×2adhEldhlctPaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp. 'deep sea'GCA_014931565.1Complete Genome | thlhbdcrt×2rnfAfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 0/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 1/8 |
Clostridium sp. ETTB3GCA_053571995.1Complete Genome | thlhbdcrtadhEldhaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp. ETTB3GCA_053572005.1Complete Genome | thlhbdcrtadhEldhaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sp. JS66GCA_033561535.1Complete Genome | thl×3hbd×3crt×4adhE×3ldh×2lctP×2accB×2accCfabGfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 4/8 |
Clostridium sp. MD294GCA_000364165.2Complete Genome | crtldh | reversebetaoxidationcore 1/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 0/8 |
Clostridium sporogenesGCA_000973705.1Complete Genome | thlhbdadhE×3ldh×2rnfArnfBrnfCrnfDrnfErnfG | reversebetaoxidationcore 2/4bcdetfmodule 0/3rnfcomplex 6/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 0/8 |
Clostridium sporogenesGCA_001020205.1Complete Genome | thlhbdcrtfabZ×4 | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 0/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 1/8 |
Clostridium sporogenesGCA_001886775.1Complete Genome | thlcrtldhlctPaccAaccD | reversebetaoxidationcore 2/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 2/8 |
Clostridium sporogenesGCA_001889325.1Complete Genome | thlcrtldhlctPaccAaccD | reversebetaoxidationcore 2/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 2/2ethanolentrysupport 0/1fattyacidbiosynthesiscore 2/8 |
Clostridium sporogenesGCA_002865785.1Complete Genome | thlhbdcrtadhEldhaccCfabZ×3 | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 0/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 2/8 |
Clostridium sporogenesGCA_007833475.1Complete Genome | thlhbdcrtadhEldhlctPrnfAaccAaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 2/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sporogenesGCA_020099295.1Complete Genome | thlhbdcrtadhEldhrnfAaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
Clostridium sporogenesGCA_021495975.1Complete Genome | thlhbdcrtadhEldhrnfAaccBaccCfabZ | reversebetaoxidationcore 3/4bcdetfmodule 0/3rnfcomplex 1/6lactateentrysupport 1/2ethanolentrysupport 1/1fattyacidbiosynthesiscore 3/8 |
No genomes match the current filters.
Marker-linked orthogroups and proteins
Enter a marker gene to narrow the orthogroup menu. Select an orthogroup to inspect its complete imported protein records.
Interpretation
Absence may reflect incomplete assemblies or annotations. Orthogroup membership is supporting evidence only; unannotated orthologues are not automatically promoted to confirmed enzyme calls. Pathway completeness is marker-rule completeness and is not a flux or thermodynamic prediction.